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GE Healthcare Life Sciences Part of GE Healthcare
Education Centre
About the purification of biomolecules
Purpose of purification
Developing purification protocols
How to combine purification steps
Purification development - summary
LC techniques
Affinity Chromatography
Desalting & Gel Filtration
Hydrophobic interaction chromatography
Ion exchange chromatography
Animation
Basic Principles
The Separation Mechanism
Type of ion exchangers
Elution modes
The typical Ion exchange experiment
Charge properties of proteins and peptides
Effect of running pH
Resolution in IEX
Optimisation of IEX experiments
Ion Exchange in practice
Technique Profile
What is Ion Exchange?
Reversed phase chromatography
Protein Purifier software
BioProcess™ Glossary

Optimisation of ion exchange chromatography experiments

    Optimizing running pH is by far the most effective way of obtaining satisfactory results with protein or peptide samples. The choice of ion exchanger type (anion or cation exchanger) may also influence selectivity quite considerably.

    Optimising the gradient slope only influences distances between the peaks and will not change their elution order.

    Using an optimal flow rate is important in isocratic experiments in order to keep zone broadening at a minimum. Provided an IEX medium with a suitable bead size (10 - 30 mm for high resolution experiments) is employed, the flow rate is less important in gradient-eluted experiments.

    Based on this, the following optimization measures are recommended in order of priority:
      • Select the type of ion exchanger that provides best resolution under standard conditions ( e.g. pH 5,0 for cation exchangers and pH 8 for anion exchangers).
      • Scout for the running pH that provides best resolution.
      • Select the steepest gradient that provides acceptable results.
      • Scout for the flow rate that provides the narrowest peaks.